MmuEX6086673 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69454328-69457445:-
Coord C1 exon
chr11:69457341-69457445
Coord A exon
chr11:69455791-69455979
Coord C2 exon
chr11:69454328-69454413
Length
189 bp
Sequences
Splice sites
3' ss Seq
AGTTTGAGGCCTCTCTCTAGGAA
3' ss Score
4.02
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GACATGTTCCTGATGGCTGCCATGGGCCCTCCTGGGGGTGGACGGACTGTTATCTCCCCAAGGCTGCAGAGTCGCTTCAACATTATCAACATGACCTTCCCCACG
Seq A exon
GAATCCCAGATCATCCGCATATTTGGCACCATGATCAACCAGAAGCTCCAGGACTTTGAAGAAGAGGTGAAGCCCATTGGGAATGTGGTAACAGAGGCCACCCTGGACGTTTACAATACGGTGGTACAGCGCTTCCTGCCCACCCCGGCGAAGATCCATTACCTCTTCAACCTCCGGGACATCTCCAAG
Seq C2 exon
GTCTTCCAGGGCATGCTTAGAGCCAACAAGGACTTTCATGATACCAAAGCCAGCATCACAAGACTCTGGATTCATGAGTGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'75-70,'75-69,76-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(22.9=100)
C2:
PF127752=AAA_7=PD(9.2=86.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGTTCCTGATGGCTGCC
R:
ACACTCATGAATCCAGAGTCTTGTG
Band lengths:
186-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types