RnoEX6048030 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56063847-56066813:-
Coord C1 exon
chr10:56066709-56066813
Coord A exon
chr10:56065268-56065456
Coord C2 exon
chr10:56063847-56063932
Length
189 bp
Sequences
Splice sites
3' ss Seq
AGTTCGAGGTCTCTTCCTAGGAG
3' ss Score
2.87
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GACATGTTCCTGATGGCTGCCATGGGGCCTCCAGGGGGTGGACGGACTGTTATCTCCCCGAGGCTGCAGAGTCGCTTCAACATCATCAACATGACCTTCCCCACT
Seq A exon
GAGTCCCAGATCATCCGCATATTTGGCACCATGATCAACCAGAAGCTTCAGGACTTTGAAGAAGAGGTAAAGCCCATTGGGAACGTGGTGACAGAGGCTACCCTAGACGTTTACAATACGGTGGTCCAGCGCTTCCTGCCCACACCAGCCAAGATTCATTACCTCTTCAACCTCCGAGACATCTCCAAG
Seq C2 exon
GTCTTCCAGGGCATGCTTAGAGCCAACAAGGATTTCCATGACACCAAAGCCAGCATCACCAGACTCTGGATCCATGAATGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'66-66,'66-65,69-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(22.9=100)
C2:
PF127752=AAA_7=PD(9.2=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCCTGATGGCTGCCATG
R:
TGAAACATTCATGGATCCAGAGTCT
Band lengths:
187-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]