DreEX6004785 @ danRer10
Exon Skipping
Gene
ENSDARG00000069660 | chrnb1
Description
cholinergic receptor, nicotinic, beta 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-070821-4]
Coordinates
chr7:22282923-22288414:+
Coord C1 exon
chr7:22282923-22282967
Coord A exon
chr7:22283180-22283289
Coord C2 exon
chr7:22288306-22288414
Length
110 bp
Sequences
Splice sites
3' ss Seq
CACCTTTTGTGCTCTTGCAGGAG
3' ss Score
10.85
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AACATGAAAGATGAGGAGATGAACACCATTGTTATGATGAACTTG
Seq A exon
GAGTGGAATGATTATCGCCTCTCCTGGAATCCCAAAGATTATGGAGGAGTTGATGTATTGCGGATCTCTTCAGGAAAAGTGTGGCTTCCTGATATTGTTCTCATCAACAA
Seq C2 exon
TAATGATGGCGTGTTCGGTGTGGCGCTACAGGTCCATGTGCAGGCCTACAGTAACGGCCGCGTGACATGGACTCCACCAGCTCTTTACAAGAGTTCGTGCGGAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069660-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.7=100)
A:
PF0293118=Neur_chan_LBD=FE(17.1=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGAAAGATGAGGAGATGAACAC
R:
CTTCACTCCGCACGAACTCTT
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]