HsaEX6020553 @ hg38
Exon Skipping
Gene
ENSG00000170175 | CHRNB1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1961]
Coordinates
chr17:7446069-7447151:+
Coord C1 exon
chr17:7446069-7446113
Coord A exon
chr17:7446833-7446942
Coord C2 exon
chr17:7447043-7447151
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCAGCCTCTGCTTCACTAGGAG
3' ss Score
6.46
5' ss Seq
CAAGTAGGA
5' ss Score
4.46
Exon sequences
Seq C1 exon
AACGAGAAGGATGAAGAGATGAGCACAAAGGTGTACTTAGACCTG
Seq A exon
GAGTGGACTGACTACAGGCTGAGCTGGGACCCTGCGGAGCACGACGGCATCGATTCGCTCCGCATCACGGCGGAATCCGTGTGGCTCCCTGACGTGGTGCTACTGAACAA
Seq C2 exon
CAATGATGGGAATTTTGACGTGGCTCTGGACATTAGCGTCGTGGTGTCCTCCGACGGCTCCGTGCGTTGGCAACCCCCGGGCATCTATCGCAGCAGCTGCAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170175-'7-11,'7-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(4.6=88.9)
A:
PF0293118=Neur_chan_LBD=FE(16.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(23.4=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGAAGGATGAAGAGATGAGC
R:
CTGGATGCTGCAGCTGCTG
Band lengths:
154-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains