DreEX6006497 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38817661-38818281:+
Coord C1 exon
chr7:38817661-38817732
Coord A exon
chr7:38817825-38817941
Coord C2 exon
chr7:38818210-38818281
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTGTGTCTTTGCAGTAT
3' ss Score
10.81
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GGGTTTCAGCAGAAATTTGCCTTTCACAGTAAAGAGATTGTAGCCATCAGCTGCTCCTGGTGCAAACAAGCA
Seq A exon
TATCATAATAAGGTGACATGCTTTATGCTGCAGCAGATAGAAGAACCATGTTCATTAGGAGCTCATGCCGCTGTAATAGTACCTCCTACTTGGATCATACGGGTTCGCCGACCTCAG
Seq C2 exon
TCCTCACTAAAGTCAAGCAAAAAGAAAAAACGGACATCTTTCAAACGTAAATCCAGCAAGAAAGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.722
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTCAGCAGAAATTTGCCT
R:
CTCTGCTCCTTTCTTGCTGGA
Band lengths:
144-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]