DreEX6007497 @ danRer10
Exon Skipping
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52463693-52465266:+
Coord C1 exon
chr7:52463693-52463850
Coord A exon
chr7:52464941-52465041
Coord C2 exon
chr7:52465120-52465266
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTATCCTTTCTTTTCTTCAGCCA
3' ss Score
8.85
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTCATGAACCACATGAAGCATCACCTGGAGTTAGAGAAGCAGAACAGCGAGAGCTGGGAGAGTCACACTACATGCCAGCACTGTTACAGACAGTATTCAACTCCTTTTCAACTGCAGTGTCACATAGAAAGTGCCCACAGTCCTTTCGAGTCCAGTA
Seq A exon
CCAACTGTAAAATATGTGAACTGGCTTTTGAGACTGAACAAGTGCTTCTGGAGCATATGAGGGACAATCACAAACCTGGAGAAATGCCCTATGGCTGTCAG
Seq C2 exon
GTTTGCAACTACAGGTCGTCCTTCTTCTGCGATGTGGATAACCACTTTCGCACAGTCCATGAAAACACTAAAGACCTGCTTTGTCCCTTTTGTCTGAAAGTTCTTCGCAGCGGCCATATGTACATGCAACACTACATGAGACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=PU(0.1=0.0)
A:
PF139121=zf-C2H2_6=WD(100=76.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCAGAACAGCGAGAG
R:
TGCATGTACATATGGCCGCTG
Band lengths:
253-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]