GgaEX1003115 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8655465-8656388:+
Coord C1 exon
chr10:8655465-8655622
Coord A exon
chr10:8656044-8656144
Coord C2 exon
chr10:8656242-8656388
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTGCTTTTTCTAGCTA
3' ss Score
8.59
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACATCATTTAGAGCTTGAGAAGCAGAGCAGTGAAAGCTGGGAAAGCCACACCACCTGCCAGCACTGTTACCGTCAGTTTCCCACCCCATTCCAGCTGCAGTGCCACATTGAAAGTACACACACACCTTACGAGTCTTCTA
Seq A exon
CTATTTGTAAAATCTGTGAATTATCCTTTGAAACAGAACAGGTTCTTTTGCAACATATGAAGGACAATCATAAACCAGGTGAAATGCCGTATGTTTGCCAG
Seq C2 exon
GTATGCAACTACAGATCCTCAGCTTTTTCAGATGTAGAAACACATTTCAGAACAGTTCATGAAAATACAAAACATCTGCTGTGTCCGTTTTGCCTCAAAGTTATTAAAATCGGAGCACCATATATGCATCATTATATGAGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375-'11-12,'11-8,13-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=29.9),PF139091=zf-H2C2_5=PU(12.0=3.4)
A:
PF139121=zf-C2H2_6=WD(100=76.5),PF139091=zf-H2C2_5=PU(12.0=8.8)
C2:
PF139091=zf-H2C2_5=PD(80.0=40.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAGCAGTGAAAGCTGG
R:
TGATGCATATATGGTGCTCCGA
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]