HsaEX6074954 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56968868-56971019:-
Coord C1 exon
chr15:56970862-56971019
Coord A exon
chr15:56969772-56969872
Coord C2 exon
chr15:56968868-56969014
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCTCCCACATTTAGCTA
3' ss Score
8.36
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACACCATTTGGAACTTGAGAAGCAGAGCAGTGAGAGCTGGGAAAACCATACCACCTGCCAGCACTGCTACCGTCAGTTTCCCACACCATTTCAGTTGCAGTGTCACATCGAAAGTACACATACGCCCCATGAATTTTCTA
Seq A exon
CTATTTGTAAAATCTGTGAATTGTCATTTGAAACAGAACATGTTCTTTTACAACATATGAAGGACAATCATAAACCTGGTGAAATGCCATATGTCTGCCAG
Seq C2 exon
GTTTGTAATTATAGATCATCATCATTTTCTGATGTAGAAACTCATTTTAGAACATCCCATGAAAACACTAAGAACTTGCTATGCCCGTTTTGCCTCAAAGTTATTAAAATTGCAACACCATATATGCATCATTATATGAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.029 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(67.9=55.9)
C2:
PF134651=zf-H2C2_2=PD(25.0=14.3),PF134651=zf-H2C2_2=WD(100=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATGAAACACCATTTGGA
R:
ACTTTGAGGCAAAACGGGCAT
Band lengths:
251-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)