DreEX6007804 @ danRer10
Exon Skipping
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57254823-57255548:+
Coord C1 exon
chr7:57254823-57254894
Coord A exon
chr7:57254981-57255070
Coord C2 exon
chr7:57255411-57255548
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTAACATAAATAGGAC
3' ss Score
6.53
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTTGTTGGTGTAGCTCAAGCGATCAATAAAAAGTGTGGAGAGAACAGCACCTTTACAGAACAGGATGAGAAG
Seq A exon
GACTTTTCTTCGTATCTGGCTTTCTCTGGCATAGTGCTACACAATGCCCAACTCTATGAGACATCACAGCTAGAGAACAGGCGAAACCAG
Seq C2 exon
GTGTTGCTGGATCTGGCTAGTCTGATCTTTGAGGAGCAGCAGTCACTGGAGGTCTTACTGAGGAAAACTGTGGCCACCATCTTATCTTTCATGCAAGCCCAAGAATGCACAGTGTTCATTTCTGACAGAGAAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(15.4=100)
A:
PF0159021=GAF=PD(6.7=33.3)
C2:
PF0159021=GAF=PU(19.7=67.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGGAGAGAACAGCACCT
R:
TCTGTCAGAAATGAACACTGTGCA
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]