BtaEX6029861 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:6938204-6942938:+
Coord C1 exon
chr6:6938204-6938275
Coord A exon
chr6:6939962-6940051
Coord C2 exon
chr6:6942801-6942938
Length
90 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTGTCTGTTTTCTAGGAC
3' ss Score
9.93
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTTGTTGGTGTAGCCCAGGCCATCAACAAGAAATCAGGAAATGGTGGGACATTCACTGAAAAAGACGAAAAG
Seq A exon
GACTTTGCTGCTTACTTGGCATTTTGTGGAATTGTTCTTCATAATGCTCAACTCTATGAGACTTCACTGCTGGAGAACAAGAGAAATCAG
Seq C2 exon
GTGCTGCTTGACCTTGCTAGCTTAATTTTTGAAGAACAACAATCATTAGAAGTAATTCTAAAGAAAATAGCTGCCACTATTATCTCTTTCATGCAGGTGCAGAAATGCACCATTTTCATAGTGGATGAAGATTGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(15.2=100)
A:
PF0159021=GAF=PD(7.9=40.0)
C2:
PF0159021=GAF=PU(19.6=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTGGTGTAGCCCAGGC
R:
CCTGCATGAAAGAGATAATAGTGGC
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]