BtaEX0026367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:6939962-6945170:+
Coord C1 exon
chr6:6939962-6940051
Coord A exon
chr6:6942801-6942938
Coord C2 exon
chr6:6945103-6945170
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCTTAATTTTTTTGTCTAGGTG
3' ss Score
10.27
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GACTTTGCTGCTTACTTGGCATTTTGTGGAATTGTTCTTCATAATGCTCAACTCTATGAGACTTCACTGCTGGAGAACAAGAGAAATCAG
Seq A exon
GTGCTGCTTGACCTTGCTAGCTTAATTTTTGAAGAACAACAATCATTAGAAGTAATTCTAAAGAAAATAGCTGCCACTATTATCTCTTTCATGCAGGTGCAGAAATGCACCATTTTCATAGTGGATGAAGATTGCTCC
Seq C2 exon
GATTCTTTTTCTAGTGTGTTTCACATGGAGTGTGAGGAATTAGAAAAATCGTCAGATACTTTAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(7.9=40.0)
A:
PF0159021=GAF=PU(19.6=67.4)
C2:
PF0159021=GAF=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGCTGCTTACTTGGCA
R:
CGTGTTAAAGTATCTGACGATTTTTC
Band lengths:
158-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development