DreEX0054313 @ danRer10
Exon Skipping
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57254981-57267655:+
Coord C1 exon
chr7:57254981-57255070
Coord A exon
chr7:57255411-57255548
Coord C2 exon
chr7:57267588-57267655
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGCGTGGTCTTGCAGGTG
3' ss Score
11.33
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTTTTCTTCGTATCTGGCTTTCTCTGGCATAGTGCTACACAATGCCCAACTCTATGAGACATCACAGCTAGAGAACAGGCGAAACCAG
Seq A exon
GTGTTGCTGGATCTGGCTAGTCTGATCTTTGAGGAGCAGCAGTCACTGGAGGTCTTACTGAGGAAAACTGTGGCCACCATCTTATCTTTCATGCAAGCCCAAGAATGCACAGTGTTCATTTCTGACAGAGAAACAGCT
Seq C2 exon
AACACATTTGCCAGTGTGTTTCACATGGAATATGAGGAGATTGCTGGATCCACAGACTTCCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(6.7=33.3)
A:
PF0159021=GAF=PU(19.7=67.4)
C2:
PF0159021=GAF=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTCGTATCTGGCTTTCTCTGG
R:
CTGTTTGGGAAGTCTGTGGATCC
Band lengths:
154-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]