GgaEX1042698 @ galGal4
Exon Skipping
Gene
ENSGALG00000011982 | PDE5A
Description
phosphodiesterase 5A, cGMP-specific [Source:HGNC Symbol;Acc:HGNC:8784]
Coordinates
chr4:54088092-54090218:+
Coord C1 exon
chr4:54088092-54088181
Coord A exon
chr4:54089300-54089437
Coord C2 exon
chr4:54090151-54090218
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACAAAGACCTGTTTTCCAGGTG
3' ss Score
5.07
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GATTTTGCTGCATATTTGGCATTTTGTGGAATTGTTCTTCACAACGCTCAATTGTATGAAACATCTTTGCTTGAAAACAGGCGTAATCAG
Seq A exon
GTGCTTCTTGATCTTGCCAGCCTTATTTTTGAAGAACAACAGTCTTTGGAAGTAATTCTGAAGAAGATAGCTGCCACTATAATATCCTTCATGCAAGTGCAGAGGTGTACCATCTTCATAGTGGACGAAGATTGTACT
Seq C2 exon
GATTCATTTTCTAGTGTTTTTCATATGGAAGCTGAGGAATTAGAAGATTCAGCAGAAAACCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982-'13-11,'13-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(7.9=40.0)
A:
PF0159021=GAF=PU(19.7=67.4)
C2:
PF0159021=GAF=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCATATTTGGCATTTTGTG
R:
CTCTTCTGGTTTTCTGCTGAATCT
Band lengths:
154-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]