BtaEX6029862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:6910169-6940051:+
Coord C1 exon
chr6:6910169-6910258
Coord A exon
chr6:6938204-6938275
Coord C2 exon
chr6:6939962-6940051
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTCTTCTTAAACCAGGTT
3' ss Score
8.02
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GATCCTCGATTCAATGCAGAAGTTGACCAAATTACAGGCTACAAGACACAAAGTATTCTTTGTATGCCAATTAAGAATCATAGGGAAGAG
Seq A exon
GTTGTTGGTGTAGCCCAGGCCATCAACAAGAAATCAGGAAATGGTGGGACATTCACTGAAAAAGACGAAAAG
Seq C2 exon
GACTTTGCTGCTTACTTGGCATTTTGTGGAATTGTTCTTCATAATGCTCAACTCTATGAGACTTCACTGCTGGAGAACAAGAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(19.2=100)
A:
PF0159021=GAF=FE(15.2=100)
C2:
PF0159021=GAF=PD(7.9=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATTCAATGCAGAAGTTGACCA
R:
TCTCTTGTTCTCCAGCAGTGA
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]