GgaEX6035048 @ galGal3
Exon Skipping
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56208257-56217928:+
Coord C1 exon
chr4:56208257-56208346
Coord A exon
chr4:56216730-56216801
Coord C2 exon
chr4:56217839-56217928
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTTTAAAACACTAGGTT
3' ss Score
5.6
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GATCCAAGATTCAATGCAGAAGTTGACCAGATCACAGGGTATAAGACTCAGAGCATTCTCTGTATGCCAATAAAGAATCATAGGGAAGAG
Seq A exon
GTTGTTGGTGTGGCTCAAGCAATTAATAAGAAATCTGGAACTGGTGGGACTTTCACGGAACAAGATGAAAAG
Seq C2 exon
GATTTTGCTGCATATTTGGCATTTTGTGGAATTGTTCTTCACAACGCTCAATTGTATGAAACATCTTTGCTTGAAAACAGGCGTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982-'4-11,'4-10,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(19.2=100)
A:
PF0159021=GAF=FE(15.2=100)
C2:
PF0159021=GAF=PD(7.9=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAAGTTGACCAGATCACA
R:
CTGATTACGCCTGTTTTCAAGCA
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]