DreEX6007805 @ danRer10
Exon Skipping
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57254024-57255070:+
Coord C1 exon
chr7:57254024-57254113
Coord A exon
chr7:57254823-57254894
Coord C2 exon
chr7:57254981-57255070
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTGATCACCAATGCTTTTAGGTT
3' ss Score
5.9
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATTCACGCTTTAATGCAGAAGTGGACCAAATTACAGGCTATAAGACACAGAGCATCTTGTGTTTGCCCATCAAAAACCACAGAGATGAG
Seq A exon
GTTGTTGGTGTAGCTCAAGCGATCAATAAAAAGTGTGGAGAGAACAGCACCTTTACAGAACAGGATGAGAAG
Seq C2 exon
GACTTTTCTTCGTATCTGGCTTTCTCTGGCATAGTGCTACACAATGCCCAACTCTATGAGACATCACAGCTAGAGAACAGGCGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(19.5=100)
A:
PF0159021=GAF=FE(15.4=100)
C2:
PF0159021=GAF=PD(6.7=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTAATGCAGAAGTGGACC
R:
TCGCCTGTTCTCTAGCTGTGA
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]