RnoEX0064350 @ rn6
Exon Skipping
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:226942389-226956810:+
Coord C1 exon
chr2:226942389-226942478
Coord A exon
chr2:226954949-226955020
Coord C2 exon
chr2:226956721-226956810
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTCTTATCCTAGGTC
3' ss Score
10.71
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATCCCCGGTTCAATGCAGAAGTTGACCAAATTACAGGCTACAAGACACAAAGTATCCTTTGTATGCCAATTAAGAACCACAGGGAAGAG
Seq A exon
GTCGTTGGTGTAGCTCAGGCCATCAACAAGAAATCAGGAAACGGTGGGACATTCACTGAAAAAGATGAAAAG
Seq C2 exon
GACTTTGCTGCCTATCTGGCATTTTGTGGCATTGTTCTTCACAACGCCCAGCTCTATGAAACGTCACTGCTGGAGAACAAAAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(19.2=100)
A:
PF0159021=GAF=FE(15.2=100)
C2:
PF0159021=GAF=PD(7.9=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGGTTCAATGCAGAAGTT
R:
TTGTTCTCCAGCAGTGACGTT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]