RnoEX6011392 @ rn6
Exon Skipping
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:226954949-226961285:+
Coord C1 exon
chr2:226954949-226955020
Coord A exon
chr2:226956721-226956810
Coord C2 exon
chr2:226961148-226961285
Length
90 bp
Sequences
Splice sites
3' ss Seq
CGTTCTCGTCTCTGTTCCAGGAC
3' ss Score
11.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCGTTGGTGTAGCTCAGGCCATCAACAAGAAATCAGGAAACGGTGGGACATTCACTGAAAAAGATGAAAAG
Seq A exon
GACTTTGCTGCCTATCTGGCATTTTGTGGCATTGTTCTTCACAACGCCCAGCTCTATGAAACGTCACTGCTGGAGAACAAAAGAAATCAG
Seq C2 exon
GTATTACTTGACCTTGCTAGCTTAATTTTCGAGGAGCAGCAGTCATTGGAAGTAATTCTGAAGAAAATAGCCGCCACTATTATCTCCTTCATGCAGGTGCAGAAGTGCACCATCTTCATCGTGGATGAAGACTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(15.2=100)
A:
PF0159021=GAF=PD(7.9=40.0)
C2:
PF0159021=GAF=PU(19.6=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACGGTGGGACATTCACT
R:
GGGCAGTCTTCATCCACGATG
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]