DreEX6008619 @ danRer10
Exon Skipping
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71625259-71626911:-
Coord C1 exon
chr7:71626789-71626911
Coord A exon
chr7:71626477-71626613
Coord C2 exon
chr7:71625259-71625335
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTGTTTAATGGCAGAAA
3' ss Score
7.11
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
Exon sequences
Seq C1 exon
AGTAAACCAGTGGCGTTTGCAGTGCGCACTAATGTTGGCTACAGTGCTTCTTCTGAAGATGACGTCCCCGTGCCTGGAACGGGAATCTCATTTGATCCTAAAGATTTCCTTCATGTTAAAGAA
Seq A exon
AAATTTAATAACGACTGGTGGATCGGCCGCTTGGTGAAGGAAGGCTGCGACATCGGTTTCATCCCAAGTCCAGTGAAGCTGGAAAGCAGTCGCCTTCGCCAGGAGCAGCGCGCAAAACAAGGACGCTTTTACTCAAG
Seq C2 exon
TAAATCAGGGGCAAACTCTTCATCCAGTTTAGGGGACATTGTTTCAAACTCACGGAAATCAACTCCTCCCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045-'4-9,'4-8,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.338 C2=0.764
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(52.9=65.9)
A:
PF0001823=SH3_1=PD(43.1=47.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCAGTGGCGTTTGCAGT
R:
GGAGGGAGGAGTTGATTTCCG
Band lengths:
194-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]