RnoEX0016173 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81990547-81995501:+
Coord C1 exon
chr17:81990547-81990669
Coord A exon
chr17:81992308-81992444
Coord C2 exon
chr17:81995425-81995501
Length
137 bp
Sequences
Splice sites
3' ss Seq
ACTTTGGATTTTGTGTGTAGAAA
3' ss Score
5.36
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACAAAACCTGTTGCATTTGCAGTTCGGACCAATGTCAGGTACAGCGCAGCCCAGGAGGATGACGTCCCGGTGCCCGGCATGGCCATCTCATTCGAGGCAAAAGATTTTCTGCATGTTAAGGAA
Seq A exon
AAATTTAATAATGACTGGTGGATAGGACGGCTGGTTAAAGAAGGCTGTGAAATCGGATTTATTCCAAGCCCGGTCAAACTAGAGAACATGAGGCTACAGCATGAACAGAGAGCCAAGCAAGGGAAATTCTACTCCAG
Seq C2 exon
TAAATCAGGAGGAAATTCATCATCCAGTTTGGGTGACATAGTACCCAGTTCCAGAAAATCGACACCTCCATCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-'14-10,'14-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.424 C2=0.852
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(51.0=61.0)
A:
PF0001823=SH3_1=PD(44.9=47.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGCAGTTCGGACCAAT
R:
CAGATGATGGAGGTGTCGATT
Band lengths:
188-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]