Special

DreEX6008938 @ danRer10

Exon Skipping

Gene
Description
glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
Coordinates
chr5:1820728-1829873:-
Coord C1 exon
chr5:1829686-1829873
Coord A exon
chr5:1827794-1827937
Coord C2 exon
chr5:1820728-1820906
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGCTGTTTCTGTAGGTT
3' ss Score
10.23
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACTGGTCAGTTATAATGTGTCAGTGTTGGGCGGCTCTAAGGCGGCTGTGAAAGTGACGCTCTCAGCGAAGGACGGCAGATGCGTGGCCTCGTCTGAAGGCCTCAGTGGAGTCCTCAAAATCACAGACGTCAACCTGTGGTGGCCTTACCTGATGCACGAGAACCCCGGATACCTGTACTCCATGGAG
Seq A exon
GTTCAGGCGATCGCAGAAGACGGACAGACGGATATTTACACTCTTCCTGTGGGCGTTCGTACTGTTCAAGTCACCAGATCCAAGTTTCTCATCAACAACAAGCTGTTTTACTTCCACGGGGTCAACAAACACGAGGATGCAGAC
Seq C2 exon
ATTCGAGGGAAAGGCTTCGACTGGCCTCTGGTGGTGAAGGATTTTAACCTGATGAAGTGGATGGGAGCCAACTCCTTCCGCACCAGCCACTATCCGTACGCTGAGGAGATCCTGCAGACGGCGGATCGACACGGCATCGTCATCATCGACGAGTGTCCGGGAGTCGGCATTAAAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063126-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0070316=Glyco_hydro_2=FE(62.6=100)
A:
PF0070316=Glyco_hydro_2=PD(19.2=39.6),PF0283612=Glyco_hydro_2_C=PU(8.6=54.2)
C2:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGCGGCTGTGAAAGTGAC
R:
TCCTCAGCGTACGGATAGTGG
Band lengths:
258-402
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]