RnoEX0040717 @ rn6
Exon Skipping
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30205719-30207256:+
Coord C1 exon
chr12:30205719-30205906
Coord A exon
chr12:30206721-30206864
Coord C2 exon
chr12:30207078-30207256
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGCACATCGACTCCCCCCAGGTG
3' ss Score
6.75
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGCTGGTGAACTACTGGATTTCTGTCCAGGGCAGTGACCATTTCCAGCTAGAAGTGCGTCTTCTGGATGAGGATGGCAAAATTGTGGCCCGTGGAACAGGGAATGAGGGTCAACTTAAGGTGCCGCGTGCCCACCTCTGGTGGCCTTACCTGATGCATGAGCATCCAGCCTACCTGTACTCCTTGGAG
Seq A exon
GTGACGATGACAACACCTGAGTCTGTGTCTGACTTCTATACCCTCCCTGTCGGGATTCGAACAGTGGCTGTCACAAAGAGCAAGTTCCTCATAAATGGGAAGCCTTTCTACTTCCAAGGCGTCAACAAGCATGAGGATTCAGAT
Seq C2 exon
ATCCGAGGGAGAGGCTTCGACTGGCCTCTGCTGATAAAGGATTTCAACCTCCTCCGTTGGCTCGGGGCAAATTCCTTTCGTACCAGCCACTATCCCTACTCGGAGGAGGTACTTCAGCTCTGTGACCGATATGGAATTGTGGTCATCGATGAGTGTCCCGGTGTGGGCATCGTGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(62.6=100)
A:
PF0070316=Glyco_hydro_2=PD(19.2=39.6),PF0283612=Glyco_hydro_2_C=PU(8.6=54.2)
C2:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCGTCTTCTGGATGAGGA
R:
GCTGAAGTACCTCCTCCGAGT
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]