GgaEX0003205 @ galGal4
Exon Skipping
Gene
ENSGALG00000002542 | GUSB
Description
beta-glucuronidase precursor [Source:RefSeq peptide;Acc:NP_001034405]
Coordinates
chr19:4926879-4928385:-
Coord C1 exon
chr19:4928198-4928385
Coord A exon
chr19:4927568-4927720
Coord C2 exon
chr19:4926879-4927057
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTTTGGGAACCCAGGTG
3' ss Score
4
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CAATGGTGCGATATCAGATATCGGTAGTTGGCAGCGAACTCTATTCCTTGTCTCTGAGTTTACGTGACCAAGAAGGGAAAGTGGTTGCTACAGGCGATGGGCCATCTGGAGAGCTAAAAGTGCCAAATCCAAACCTGTGGTGGCCTTATCTGATGCACGAGAACCCTGGATACCGCTACTTCTTAGAG
Seq A exon
GTGAAAATGCAGGCGCAGGCCAGCGGTGTGCCACAGGAGGACATCTACACACTGCCGGTTGGCATCCGCACCGTGCACGTCACCAGCACGCAGTTCCTCATCAACGGAAAGCCCTTCTACTTCCACGGGGTCAACAAGCACGAGGACGCGGAT
Seq C2 exon
ATTCGTGGCAAAGGCCTGGACTGGGCACTGATCGTTAAGGACTTCAACCTGCTGCGCTGGTTGGGGGCAAACTCCTTCCGTACCAGCCACTACCCCTATGCTGAGGAGATCATGGACCTGTGTGACACCTACGGCATCGTGGTGATTGATGAGTGCCCGGGAGTGGGGATTAAGATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(60.8=100)
A:
PF0070316=Glyco_hydro_2=PD(21.6=43.1),PF0283612=Glyco_hydro_2_C=PU(17.8=51.0)
C2:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTGGTTGCTACAGGCGA
R:
AGGTGTCACACAGGTCCATGA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]