DreEX6010888 @ danRer10
Exon Skipping
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25513764-25516402:-
Coord C1 exon
chr5:25516274-25516402
Coord A exon
chr5:25513997-25514133
Coord C2 exon
chr5:25513764-25513909
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGCAATTGTTCTCATTCAGAAA
3' ss Score
6.98
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TTCTGGCCGCAACTACAGAGTGCTAGTTGGCAAGCATGACCTGTCAGTAAATGAGGAAGGATCCCAGACCATCAGCGCACAGAAGATCATTGTACACGAGAAATGGAACTCAATGTTTGTTGCTCTTGG
Seq A exon
AAACGACATTGCCCTGATCAAGTTGGCTGAGCCTGTGACACTGAGTGATACTATTCAGTTGGGCTGTGTTCCTGCTCCTGGCGATGTCCTCCCAAACAACTACCCTTGCTATATTTCAGGCTGGGGAAGACTCTCCA
Seq C2 exon
CTGGTGGTGCTCTTCCTGACAGACTTCAGCAGGCTCTGATGCCCGCTGTGGATCACGCCACCTGCTCCAGGTTTGACTGGTGGGGCTCCAGTGTCAAGGAGACCATGGTCTGCGCTGGTGGAGATGGTGTTGTCGCTGGATGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTTGGCAAGCATGACCT
R:
CGACAACACCATCTCCACCAG
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]