MmuEX0020789 @ mm10
Exon Skipping
Gene
ENSMUSG00000078520 | Cela3a
Description
chymotrypsin-like elastase family, member 3A [Source:MGI Symbol;Acc:MGI:3651647]
Coordinates
chr4:137403800-137405715:-
Coord C1 exon
chr4:137405581-137405715
Coord A exon
chr4:137404385-137404521
Coord C2 exon
chr4:137403800-137403929
Length
137 bp
Sequences
Splice sites
3' ss Seq
GGACTCCCCTTTTCCCCCAGCAA
3' ss Score
6.65
5' ss Seq
CTAGTACGT
5' ss Score
6.23
Exon sequences
Seq C1 exon
GCCTTATCTCAACTACCGGGTGGTACTTGGGGAGCATGAACATGGTGTGGAGGAGGGCTCAGAGCAGGTGATCCCCATCAATGCTGGAGAACTCTTTGTGCACCCCAAGTGGAACTCCGAATGTGTGAACTGTGG
Seq A exon
CAATAACATCGCTCTGGTCAAGCTCTCAAGAAGTGCCCAGCTGGGAGATGCAGTCCAGCTTGCCTGCCTCCCTCCTGCTGGTGAAATCCTACCCAACGGAGCACCCTGTTACATCAGCGGCTGGGGCCGGCTCTCTA
Seq C2 exon
CCAATGGACCTCTGCCAACCAAGCTGCAGCAGGCCTTGCTGCCTGTGGTGGACTATGAACACTGCTCCAGGTGGGACTGGTGGGGCCACTATGTGAAGAGGACCATGGTGTGCGCCGGCGGCTACATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078520-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
71%=50=67%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.1=100)
A:
PF0008921=Trypsin=FE(18.5=100)
C2:
PF0008921=Trypsin=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTATCTCAACTACCGGGTG
R:
GCACACCATGGTCCTCTTCAC
Band lengths:
248-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types