DreEX6011091 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27773077-27774450:+
Coord C1 exon
chr5:27773077-27773248
Coord A exon
chr5:27773321-27773452
Coord C2 exon
chr5:27774239-27774450
Length
132 bp
Sequences
Splice sites
3' ss Seq
AAACTTTCTCTCTTTTACAGATG
3' ss Score
11.76
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTGATGTATGGCGGCAGGGTTATTGACAGCTTTGATCGTAGGATCCTCACAGTTTACACGGATGAATATCTGGGCGACTTCATCTTTGACACCTTCCAGCCCTTTCATTTCTTTCACAATGCAGATGTAGACTACAAGATCCCAGCACTTGGACCCAAGCAGGTTTACGTTG
Seq A exon
ATGAGATCGAGTCGCTGCCTCTTGCTAACACTGCAGAGGTGTTTGGTTTGCACCCTAATGCTGAGATTGGATATTACACTCAGGCTGCCCGGGACATGTGGACTCATCTTATTGAGCTCCAACCACAGACAG
Seq C2 exon
GTGACTCAGGCGGTGGTATCAGTCGAGATGAGTACATCAGCCAGGTGGCGAGGGACATTCAGAGCAAACTGCCTGAAGTGTTTGATCTGGACGTGATCCGCAAGAAGCTGGGACTGGAGATCTCTCCTACATCTGTGGTACTGCTTCAAGAGCTGGAGCGCTTTAACAAACTCACCGTGAGGATGAGCCGCTCTCTGGCTGAGCTACAGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'79-77,'79-76,80-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.028
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.0=100)
A:
PF0302810=Dynein_heavy=FE(6.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGGGTTATTGACAGCTT
R:
ACACTTCAGGCAGTTTGCTCT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]