GgaEX1020159 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4857903-4859735:-
Coord C1 exon
chr15:4859640-4859735
Coord A exon
chr15:4858574-4858705
Coord C2 exon
chr15:4857903-4858114
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTTTTTGTATTGCAGTGG
3' ss Score
7.51
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTCTGCATGGAAATTCTTCACACATATTTGACAAAAGCTTTCCAGCAAAACGATGATAAAATCCCTTGGAGCAGCCTCAAGTATCTTATTGGAGAG
Seq A exon
TGGCAATAGAAAGTCTGCCCCTTGCTAATACTCCAGAAGTATTTGGTCTTCACGCCAATGCTGAGATTGGGTATTACACACAGGCAGTTCGTGGTATATGGTCTCATCTTCTCGAGCTGCAGCCTCAAACAG
Seq C2 exon
GTGAATCTGGTACAGGAGTTAGTCGAGATGAATATATTGCTCACGTTGCTAAGGATATAGAAAACAAAATACCAGAAGTATTTGATCTTAACAAGATACGGAAAGGTTTTGGACTGGACCTATCCCCTACAACTGTGGTGCTGTTGCAGGAATTGGAACGTTTTAATAAACTCATCATTTGCATGGCAAAGTCATTGGCTGAACTGCAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.3=100)
A:
PF0302810=Dynein_heavy=FE(6.1=100)
C2:
PF0302810=Dynein_heavy=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATCCCTTGGAGCAGCCTC
R:
AGTTCAGCCAATGACTTTGCCA
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]