HsaEX6069919 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123930402-123931847:+
Coord C1 exon
chr12:123930402-123930573
Coord A exon
chr12:123931341-123931472
Coord C2 exon
chr12:123931636-123931847
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTGTTCTCTGTGATTGCAGAAG
3' ss Score
5.5
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTG
Seq A exon
AAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAG
Seq C2 exon
GGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCCCCCACTTCGGTGGTGCTCCTGCAGGAACTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACGAAGTCTCTGGCTGAACTTCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'99-97,'99-96,101-97=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.0=100)
A:
PF0302810=Dynein_heavy=FE(6.2=100)
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAACAAGGAAGTGGACT
R:
CTTCGTCATCCGGACCACAAG
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains