DreEX6011105 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27757193-27758286:+
Coord C1 exon
chr5:27757193-27757367
Coord A exon
chr5:27757856-27758037
Coord C2 exon
chr5:27758150-27758286
Length
182 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTGTGGTGCTGTAGATC
3' ss Score
7.29
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CGGAAGAGAAGAAAACCCTGGCGGAGGAGAAGGCTAAAGAAATAGAGGAGCAGAATAAGGTGATAGTGGTGGAGAAGAAGGATGCTGAGAGCTCTTTAGCTGAAGCTCTTCCTGCTTTAGAGGCCGCTCGCATCGCCCTGCAAGACCTAGACAAAAGTGATGTCACAGAAATCAG
Seq A exon
ATCCTTCACCAAACCACCTAAACAGGTGCAGACTGTGTGCGAGTGCATCCTTGTCATTCGGGGCTATAAAGAGATCAACTGGAAGACAGCCAAGGGCATGATGTCAGAGGGCAACTTCCTGCGCTCGCTTATGGAAATGGACTGTGACTCTATCAACGCCAATCAAGTAAAACATGTCAAAG
Seq C2 exon
CCTATCTAAGAAACCTCAACACCAGTTTGGAGGAGATGCAAGGCATCAGTAAAGCTGGGTCTGGGATGCTAAGGTTCGTGGAGGCAGTCATGGGCTACTGTGAAGTGGCCAGAGACATCAAACCTAAAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'62-60,'62-59,63-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.2=100)
A:
PF127772=MT=FE(18.0=100)
C2:
PF127772=MT=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAAAACCCTGGCGGAG
R:
GCCTCCACGAACCTTAGCATC
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]