MmuEX6021054 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125294192-125296513:+
Coord C1 exon
chr5:125294192-125294366
Coord A exon
chr5:125294920-125295101
Coord C2 exon
chr5:125296377-125296513
Length
182 bp
Sequences
Splice sites
3' ss Seq
CGGGCCCTCTTGTCGCCCAGGTC
3' ss Score
7.12
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGGAGGAGAAGAAGAAGCTGGCAGAGGAGAAGGCCATAGAGATCGAAGAGCAGAACAAGATCATCGCTGTCGAGAAGGCCGAGGCTGAGACAGCTCTGGCTGAGGTCATGCCCATCCTGGAGGCTGCCAAACTAGAGCTGCAGAAGCTGGACAAGTCCGACGTGACTGAAATCAG
Seq A exon
GTCATTCGCGAAGCCCCCGAAGCAAGTGCAGACAGTCTGTGAGTGCATCCTCATCATGAAAGGCTACAAGGAGCTTAACTGGAAAACTGCCAAGGGCATGATGTCCGACCCCAACTTCTTGAGGTCCCTGATGGAAATCGACTTCGATTCCATCACCCAGGGTCAAGTGAAGAACATCAAAG
Seq C2 exon
GCCTCCTAAAGACTCTGAACACCACAATCGAAGAGATGGAGGCTGTGAGCAAGGCAGGGCTGGGCATGCTGAAGTTCGTGGAGGCCGTCATGGGCTACTGTGATGTGTTTCGGGAGATCAAGCCCAAAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'57-60,'57-59,58-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.2=100)
A:
PF127772=MT=FE(18.0=100)
C2:
PF127772=MT=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGCTGGCAGAGGAGA
R:
CTCCACGAACTTCAGCATGCC
Band lengths:
249-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: