GgaEX6013583 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4915731-4917880:-
Coord C1 exon
chr15:4917706-4917880
Coord A exon
chr15:4916838-4917019
Coord C2 exon
chr15:4915731-4915867
Length
182 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTACTTGTTTTCTAGGTC
3' ss Score
11.08
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CTGAAGCAAAGAAAAAACTGGCTGAAGAAAAAGCTACGGAGATACAGGAACAGAATAGGATTATTGCTATGGAGAAGGCGGCTGCTGAGGCAGCTCTGGCTGAAGTTATGCCTGTTTTAGAAGCTGCCAAACTGGAGCTGCAGAAGCTTGACAAGTCTGATGTTACTGAGATCAG
Seq A exon
GTCCTTTGCAAAACCCCCTAAACAGGTGCAAGCTGTTTTGGAATGTGTTCTTATAATGAGGGGGTACAAAGAATTAAACTGGAAGACAGCCAAAGGAATGATGTCAGAGGCAAATTTCCTGCGATCTCTGATGGAATTAGATTTTGATGGAATTACTTACGGCCAAGTGAAATCTGTCCGAG
Seq C2 exon
CTGTGTTAAAGAGTCTTAATACTACCTTCACTGAAATGGAACTTGTTAGCAGAGCTGGCCTGGGAATGCTCAAGTTTGTTGAAGCGGTGATGAGCTACTGTGATGTAGTTAGAGAAGTCAAGCCAAAGAGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'56-56,'56-55,57-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(17.2=100)
A:
PF127772=MT=FE(18.0=100)
C2:
PF127772=MT=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAAGAAAAAGCTACGGA
R:
AGCTCATCACCGCTTCAACAA
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]