DreEX6011121 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27740392-27741924:+
Coord C1 exon
chr5:27740392-27740583
Coord A exon
chr5:27740668-27740786
Coord C2 exon
chr5:27741766-27741924
Length
119 bp
Sequences
Splice sites
3' ss Seq
TAACTGATTTTTGAATGTAGGTG
3' ss Score
6.5
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
Exon sequences
Seq C1 exon
GATGTGGTTCTGATGAGAGCTCTTCGAGACATGAACCTACCCAAGTTTGTATTTGAGGATGTTCCTCTGTTTTTGGGCCTCATCTCAGATCTGTTTCCTGGACTCGACTGTCCACGTGTGCGTTATCCCAGCTTCAATGATGCTGTAGAGGCCATCCTGGAGGAAAATAGGTATATCATGATGCCCAGTCAG
Seq A exon
GTGGACAAAGTGGTGCAAATGTATGAAACTATGATGACCAGACACACAACCATGGTTGTCGGACCCACAGGAGGAGGGAAATCTGTGGTGATCAACACACTCTGCCAATCACAGACCAG
Seq C2 exon
GTTGGGACTGCTGACCAAATTGTACAGCCTGAACCCTAAAGCAATGAGTGTCATTGAGCTATATGGGATCCTGGATCCGGTCACCCGAGACTGGACTGATGGAATATTATCGAACATATTTCGTGACATCAATAAACCCACCGATAAAAAAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'42-39,'42-38,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(17.4=60.0)
C2:
PF077289=AAA_5=PU(46.0=96.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTTCCTGGACTCGACTGT
R:
CGGTGGGTTTATTGATGTCACG
Band lengths:
246-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]