HsaEX6069952 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124341603-124345717:+
Coord C1 exon
chr12:124341603-124341794
Coord A exon
chr12:124343697-124343815
Coord C2 exon
chr12:124345559-124345717
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCCATTGTTTGTCCCGCAGGTG
3' ss Score
11.77
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGTCCTACCCATCCAG
Seq A exon
GTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAA
Seq C2 exon
GCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'38-41,'38-38,39-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0319311=DUF258=PU(30.0=28.1)
A:
PF0319311=DUF258=FE(65.0=100)
C2:
PF077289=AAA_5=FE(38.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTGCGAGACATGAACTT
R:
GGTCCAGGATGCCGTAGAGTT
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)