GgaEX0004144 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4883036-4883843:-
Coord C1 exon
chr15:4883652-4883843
Coord A exon
chr15:4883364-4883482
Coord C2 exon
chr15:4883036-4883194
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTAATATGTATTTTTTCAGGTG
3' ss Score
8.88
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGGTTGTACTGATGAGAGCTCTACGAGATATGAATCTTCCTAAATTTGTGTTTGAAGATGTACCTCTCTTCCTTGGCCTAATCTCTGACCTGTTTCCTGGCCTGGACTGCCCTCGAGTCCGCTACCCTGACTTTAATGATGCTGTAGAACAAGTGCTGGAAGAAGGGGGTTATATTGTTTTACCAGTTCAG
Seq A exon
GTGGATAAAGTTGTTCAGATGTATGAGACAATGTTAACTAGACACACTACAATGGTGGTTGGGCCTACTGGAGGTGGCAAATCAGTTGTCATTAATGCTTTGTGCCAAGCCCAGAACAA
Seq C2 exon
GCTGGGATTATTGACAAAGCTTTACACACTGAATCCTAAAGCTATGTCTGTGATTGAACTATATGGGATCCTTGACCCTACCACACGAGACTGGACAGATGGAGTCCTGTCAAACATTTTTCGGGAGATCAACAGGCCTACTGACAAGAAAGAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX3-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF077289=AAA_5=PU(17.4=60.0)
C2:
PF077289=AAA_5=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGACCTGTTTCCTGGCC
R:
GTAGGCCTGTTGATCTCCCGA
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]