DreEX6011225 @ danRer10
Exon Skipping
Gene
ENSDARG00000076592 | man1b1b
Description
mannosidase, alpha, class 1B, member 1b [Source:ZFIN;Acc:ZDB-GENE-070705-482]
Coordinates
chr5:28588801-28589516:-
Coord C1 exon
chr5:28589368-28589516
Coord A exon
chr5:28589088-28589276
Coord C2 exon
chr5:28588801-28588991
Length
189 bp
Sequences
Splice sites
3' ss Seq
ACTCCTGAATCATTTTTCAGAAA
3' ss Score
8.06
5' ss Seq
AAGGTCAAA
5' ss Score
1.82
Exon sequences
Seq C1 exon
AGTTTGCAGAGGCCAGGGAGTGGGTGGCCAAAGAGCTCTCTTTCGATAAGAATGTGGATGTTAATCTGTTCGAGAGCACCATTCGTATCCTGGGTGGCCTACTGAGTACCTACCATCTCACAGGAGACAACCTTTTCCTGGATAAAGCT
Seq A exon
AAAGAGATTGGCTTCAGACTGATGCCCGCCTTCAGCACTCCCTCCAAAATCCCCTATTCTGATGTGAATATTGGGAAGGGCACAGCTCATCCTCCGCGATGGACTTCAGACAGCACCGTAGCCGAGGTCACTAGCATTCAGCTGGAGTTCAGAGAGCTCAGCCGACTCACTGGAGACCCCAAATACAAG
Seq C2 exon
CTGGCTGTGATGGAGGTGATGAAGCAGGTGCACAAACTGGATGGAAAGCAAGATGGGCTTGTGCCGATGTTTATCAATACCAACAATGGACTGTTCACCCATCAGGGCATTTACACGCTAGGCGCCAGGGCTGACAGCTACTATGAGTATCTGCTTAAGCAGTGGATACAGGGAGGCAGAATCGAGCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076592-'8-14,'8-12,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(11.2=100)
A:
PF0153215=Glyco_hydro_47=FE(14.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATTCGTATCCTGGGTG
R:
TCTGCCTCCCTGTATCCACTG
Band lengths:
254-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]