GgaEX6014642 @ galGal3
Exon Skipping
Gene
ENSGALG00000009079 | MAN1B1
Description
NA
Coordinates
chr17:719118-721229:-
Coord C1 exon
chr17:721081-721229
Coord A exon
chr17:720265-720453
Coord C2 exon
chr17:719118-719308
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTGTGTTTTCTTTAGAAA
3' ss Score
10.06
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGTTTGAAGAAGCAAGAAAATGGGTAGCAAACGATTTAGCCTTTGATAAAAATGTGGATGTGAACCTGTTTGAGAGCACTATTCGTATTCTGGGTGGCTTACTGAGCACCTACCATCTCTCTGGAGATAGCCTCTTCCTGGAAAAAGCT
Seq A exon
AAAGACATTGGGAACAGGCTCATGCCAGCATTCAAGACTCCTTCCAAAATTCCGTACTCTGACGTCAACATTGGCCGGGGCACCGCACACCCACCCCGCTGGACGTCTGACAGCACTGTGGCAGAGGTGACCAGTATACAGCTGGAGTTCAGAGAGCTCTCTCGTCTCACTGGGGATGAAAAATACCAG
Seq C2 exon
AAAGCTGTTGATGAGGTGATGAAACATGTTCACACCCTTTCAGGGAAAAATGATGGACTGGTGCCTATGTTCATAAACACCAACAGTGGGCAGTTCACTCACTTAGGTGTTTATACTCTGGGAGCCAGAGCTGACAGCTACTATGAGTATTTACTCAAGCAGTGGATTCAGGGTGGGAAAACAGAAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(11.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTATTCTGGGTGGCTTACTGA
R:
CCACCCTGAATCCACTGCTTG
Band lengths:
243-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]