RnoEX0052020 @ rn6
Exon Skipping
Gene
ENSRNOG00000012559 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:RGD Symbol;Acc:1563595]
Coordinates
chr3:2559332-2565080:+
Coord C1 exon
chr3:2559332-2559480
Coord A exon
chr3:2561069-2561257
Coord C2 exon
chr3:2564890-2565080
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTCTGGTGCTCTTATGCTAGGAG
3' ss Score
5.85
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AATTTAAGGAAGCCAGGAAGTGGGTGTCGGAGAACTTAGACTTTCAGAAGAATGTCGATGTCAACCTGTTTGAGAGTACTATCCGAATCTTAGGGGGCCTGCTGAGTGCCTACCACCTGTCTGGGGACAGCCTCTTCCTGAGCAAGGCC
Seq A exon
GAGGATTTTGGAAACCGGTTAATGCCTGCCTTCACCACACCCTCCAAGATTCCATACTCTGATGTGAACATTGGCACTGGGTTTGCCCACTCGCCCCAGTGGACTTCAGACAGCACGGTGGCAGAAGTGACGAGCATTCAGTTGGAGTTCCGAGAGCTCTCCCGTCTTACCGGGATTAAGAAATTCCAG
Seq C2 exon
GAGGCCGTGGAGGAAGTGACAAAGCACATCCACTCCCTGTCTGGGAAGAAAGACGGGCTGGTGCCTATGTTCATCAACACGAACAGCGGCCTCTTCACCCACCCGGGAGTGTTCACCTTGGGTGCCAGGGCTGACAGCTACTACGAATACCTGCTGAAACAGTGGATCCAGGGTGGCAAGAAGGAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012559-'12-20,'12-16,15-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(11.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.1=100)
C2:
PF0153215=Glyco_hydro_47=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAATCTTAGGGGGCCTG
R:
CCCTGGATCCACTGTTTCAGC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]