DreEX6011336 @ danRer10
Exon Skipping
Gene
ENSDARG00000033953 | entpd2a.2
Description
ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
Coordinates
chr5:28966441-28967287:-
Coord C1 exon
chr5:28967128-28967287
Coord A exon
chr5:28966799-28967026
Coord C2 exon
chr5:28966441-28966704
Length
228 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGCCCGTTTCTTCAGTAT
3' ss Score
8.9
5' ss Seq
AAGGTTAAG
5' ss Score
3.39
Exon sequences
Seq C1 exon
TATTTCTAAACCCAAAGAGTCGGCTGAGGTCTTAAAAGAAGTTGGAGAAAAACTGAAGAGCTATCCGTTCAGCTTTAAAGGAGCCTCTATCTTAACTGGACAAGATGAGGGAGCTTATGGATGGATCACAGTCAACTACCTGCTGGAGAATTTTATTAAG
Seq A exon
TATGGTTTTGTGGGTCAGTGGATTACTCCAGGCAGAGATACAGTTGGTGCGCTGGACTTTGGCGGAGCGTCTACTCAGATCACCTTTGTGACGAAACAGACCGTGGAGAACAAGGATGACCTGATGAAACTGCGGCTGTACGGGCGAGACTACCAGATCTACACTCACAGTTTTCTGTGTTATGGACAAGACCAGGCTTTACTCCGACTGCTGGCACATCTAATCAAG
Seq C2 exon
ACTCAGGGTTCAGACACATCTATAGTCCACCCCTGTTATCCTGCAGATTACAGCAGCTCTATAAAGCTGAGCAGTGTGTTTGATACTCCATGTGTTAAAAGACAAACTCCTTATAAACCTGATGATGAGCTGCAAATAAAAGGCACCGGAAACTACAATCAGTGTCTAGGAAATGTTTCTCAACTCTTCTCCTTTAGCAGCTGCTCTTATTCCAAATGCTCTTTCGACGGAGTCTTTCAGCCCAACATTACTGGAAACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033953-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
PF0115012=GDA1_CD39=FE(17.6=100)
C2:
PF0115012=GDA1_CD39=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCAAAGAGTCGGCTGAG
R:
CCGGTGCCTTTTATTTGCAGC
Band lengths:
302-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]