RnoEX0032235 @ rn6
Exon Skipping
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2620209-2621453:+
Coord C1 exon
chr3:2620209-2620368
Coord A exon
chr3:2620454-2620576
Coord C2 exon
chr3:2621199-2621453
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCAAACTCTATTCTCCACAGTAT
3' ss Score
5.47
5' ss Seq
GAGGTTCAT
5' ss Score
1.75
Exon sequences
Seq C1 exon
CCTGACCAGCCCAGAGGCCACAGCCAGGGTGCTTGAGGCAGTGACACAGACGCTCACACAGTACCCCTTTGACTTCCGTGGTGCTCGCATCCTCTCGGGACAGGATGAAGGGGTGTTTGGCTGGGTGACTGCCAACTACCTGCTGGAGAACTTCATCAAG
Seq A exon
TATGGCTGGGTGGGCCGGTGGATACGGCCAAGGAAGGGAACACTGGGGGCCATGGACCTTGGGGGTGCTTCGACACAGATCACCTTTGAGACAACCAGTCCCTCTGAAGATCCAGGCAACGAG
Seq C2 exon
ATCCATCGCTTCCACCCCTGCTGGCCAAAGGGCTACTCTACCCAAGTGCTGCTCCAGGAAGTCTACCAGTCGCCATGCACGATGGGTCAGCGTCCCCGGGCCTTCAATGGCAGTGCCATCGTCAGCCTGTCAGGAACCAGCAATGCTACCCTGTGTCGTGACCTCGTCTCTCGGCTCTTCAACATCTCCTCCTGCCCCTTTTCCCAATGCTCCTTCAATGGGGTCTTCCAGCCTCCCGTGGCTGGAAACTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102-'7-5,'7-4,8-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.4=100)
A:
PF0115012=GDA1_CD39=FE(17.6=100)
C2:
PF0115012=GDA1_CD39=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACGCTCACACAGTACC
R:
GTTCCTGACAGGCTGACGATG
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]