GgaEX6014651 @ galGal3
Exon Skipping
Gene
ENSGALG00000009058 | F1NGR8_CHICK
Description
NA
Coordinates
chr17:789808-791042:+
Coord C1 exon
chr17:789808-789967
Coord A exon
chr17:790058-790285
Coord C2 exon
chr17:790776-791042
Length
228 bp
Sequences
Splice sites
3' ss Seq
ACCGCTGTCTCCTTGCCTAGCGT
3' ss Score
8.5
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
AATTGCAGACCCACCGTCCTCAGACGCTGTCCTCAGTGCAGTGATGGCCACACTGAAGTCGTACCCCTTTGATTTCCGGGGAGCAAAGATCCTGTCAGGGGAAGAGGAGGGGGTGTTTGGCTGGATCACGGCAAACTACCTCCTGGAGAACTTCATCAAG
Seq A exon
CGTGGTTGGCTCGGAGAATGGATCCAATCCAAGAAGAAGACCCTGGGGGCCATGGACTTTGGAGGCGCTTCCACACAGATCACTTTTGAAACCAGTGATGCCATTGAAGATCCCAAAAATGAGGTGATGCTGAAGCTGTACGGCCAGCCATACAAGGTGTACACCCATAGCTTCCTCTGCTACGGAAGGGACCAGGTCCTCAAGAGGCTGCTCTCAAAGGTCCTCCAG
Seq C2 exon
GCTGAGAACTACCAAGAAACTGTCGCCAATCCTTGCTGGCCCACGGGCTACCGCAAGAGTCTGTCACTGAGCAGCATCTATGACAGCCCCTGCACGGAGAAGGAGCGGCCCGGCCTTCCCCTCAACACCACCGTTGTCGTGTCCGGTACCGGGAATGGGAACCTCTGTGCTGTGCACGTCAACAAGCTCTTTGACTTCACCAGCTGCTCCTTCTCCCACTGCTCCTTCGATGGTGTTTTCCAACCTGAGGTTTCAGGGAACTTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058-'3-7,'3-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.034
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(12.2=100)
A:
PF0115012=GDA1_CD39=FE(17.3=100)
C2:
PF0115012=GDA1_CD39=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACCCCTTTGATTTCCGGG
R:
AAGAGCTTGTTGACGTGCACA
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]