DreEX6012915 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45151700-45157592:-
Coord C1 exon
chr5:45157419-45157592
Coord A exon
chr5:45154617-45154781
Coord C2 exon
chr5:45151700-45151793
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTGTCAATGGTCAGATC
3' ss Score
4.5
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TTTATGGATCGGCTTAAACTGCTTCTGATGCCTGCCAAACACCAGCCAGACCTGATCTACCTTCGACACGTTCCTCTGAGAAAGGTCCATCTCTTCACCTTTGTCCAGCTGCTCTGTCTGGCTCTTCTTTGGGTCCTCAAGTCCACCGTGGCGGCCATCATCTTTCCTGTTATG
Seq A exon
ATCTTGGCTCTGGTAGCTGTGAGGAAGGCGCTGGACTATATTTTCTCTCAGCATGACCTCAGCTTCCTGGATGACGTCATACCTGAGAAGGACAAGAAAAAGAAGGAAGATGAGAAGAAAAAGAAAAAGAAGAAGCAAGGGAGCATTGACAGCGACATGGAAGAT
Seq C2 exon
TCTGACTATCCTTACAATGAGAATGTCCCCAGCATTAAAATCCCAATGGACATGATGGAGCAGGAGCCTTTTTTAGGAGATAAGGCCTCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'28-29,'28-27,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.382 C2=0.125
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(10.7=58.6),PF103594=Fmp27_WPPW=PU(0.1=0.0)
A:
PF103594=Fmp27_WPPW=FE(63.5=100)
C2:
PF103594=Fmp27_WPPW=PD(32.9=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCGGCTTAAACTGCTTCT
R:
AAAAGGCTCCTGCTCCATCATG
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]