GgaEX1053593 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51864275-51872040:+
Coord C1 exon
chr4:51864275-51864448
Coord A exon
chr4:51867036-51867197
Coord C2 exon
chr4:51871944-51872040
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTCTGCCTTTTCAGATC
3' ss Score
12.83
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
TTCATGGATCGTCTGAAGCTGCTCTTGATGCCTCTAAAGCACCAGCCTGATTTTATCTATCTGCGTCATGTCCCGCTGCGCAGGGTCCATCTGTTCACGTTTCTGCAGGTGGTTTGCTTAGCCCTACTCTGGATTCTCAAGTCAACTGTGGCCGCTATCATATTCCCTGTCATG
Seq A exon
ATCTTGGCACTTGTAGCAGTCAGAAAAGCCATGGACTACCTCTTCTCCCAGCATGACTTAAGTTTTCTTGATGACGTCATTCCAGAGAAGGACAAGAAAAAGAAAGAGGATGAGAAGAAGAAGAAAAAGAAGAAGGGCAGTCTGGACAGTGACAATGAGGAT
Seq C2 exon
TCTGACTGCCCCTACTCAGAAAAAGTCCCAAGTATTAAAATACCAATGGACATCATGGAGCAGGAACCTTTCCTAAGTGATAGCAAACCTGCCGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.407 C2=0.273
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(6.5=58.6),PF103594=Fmp27_WPPW=PU(1.1=1.7)
A:
PF103594=Fmp27_WPPW=FE(59.6=100)
C2:
PF103594=Fmp27_WPPW=FE(36.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGGATCGTCTGAAGCTGC
R:
GGTTCCTGCTCCATGATGTCC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]