GgaEX1053593 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49777684-49785449:+
Coord C1 exon
chr4:49777684-49777857
Coord A exon
chr4:49780445-49780606
Coord C2 exon
chr4:49785353-49785449
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTCTGCCTTTTCAGATC
3' ss Score
12.83
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
TTCATGGATCGTCTGAAGCTGCTCTTGATGCCTCTAAAGCACCAGCCTGATTTTATCTATCTGCGTCATGTCCCGCTGCGCAGGGTCCATCTGTTCACGTTTCTGCAGGTGGTTTGCTTAGCCCTACTCTGGATTCTCAAGTCAACTGTGGCCGCTATCATATTCCCTGTCATG
Seq A exon
ATCTTGGCACTTGTAGCAGTCAGAAAAGCCATGGACTACCTCTTCTCCCAGCATGACTTAAGTTTTCTTGATGACGTCATTCCAGAGAAGGACAAGAAAAAGAAAGAGGATGAGAAGAAGAAGAAAAAGAAGAAGGGCAGTCTGGACAGTGACAATGAGGAT
Seq C2 exon
TCTGACTGCCCCTACTCAGAAAAAGTCCCAAGTATTAAAATACCAATGGACATCATGGAGCAGGAACCTTTCCTAAGTGATAGCAAACCTGCCGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'42-40,'42-39,44-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.407 C2=0.273
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000018948fB12106
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGGATCGTCTGAAGCTGC
R:
GGTTCCTGCTCCATGATGTCC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]