DreEX6014240 @ danRer10
Exon Skipping
Gene
ENSDARG00000102607 | pmpca
Description
peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
Coordinates
chr5:64355520-64358762:+
Coord C1 exon
chr5:64355520-64355602
Coord A exon
chr5:64357516-64357610
Coord C2 exon
chr5:64358662-64358762
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTCATTTTTACAGGGA
3' ss Score
10.66
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
TCTACAGCCCAGTTCGGAAGTAAAGACGAAATTCTGCTGACACTTGAGAAACATGGAGGGATATGTGACTGCCAAACATCCAG
Seq A exon
GGACACAACCATGTATGCGGTTTCAGCTGAGGTGAAGGGTCTGGATACAGTAGTGCATCTCCTGTCAGATGCGGTTTTACAGCCTCGTTTATTAG
Seq C2 exon
ATGAGGAGATTGAGATGGCCAGAATGGCTGTTCGGTTTGAGTTGGAGGATCTGAACATGAGGCCTGACCCGGAGCCTTTACTGACAGAAATGATTCATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102607-'6-8,'6-5,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(17.9=100)
A:
PF0067515=Peptidase_M16=FE(21.2=100)
C2:
PF0067515=Peptidase_M16=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAGCCCAGTTCGGAAGT
R:
TCAGTAAAGGCTCCGGGTCAG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]