MmuEX0035985 @ mm9
Exon Skipping
Gene
ENSMUSG00000026926 | Pmpca
Description
peptidase (mitochondrial processing) alpha [Source:MGI Symbol;Acc:MGI:1918568]
Coordinates
chr2:26246015-26247486:+
Coord C1 exon
chr2:26246015-26246097
Coord A exon
chr2:26246604-26246698
Coord C2 exon
chr2:26247386-26247486
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTGGCTTATTTCCTTTCAGAGA
3' ss Score
10.06
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
TCCACTGCTCGATTTGACAGCAAAGACGAAATCCTGCTTACGCTGGAAAAACATGGTGGTATCTGTGACTGCCAGACCTCAAG
Seq A exon
AGACACCACCATGTATGCTGTGTCTGCTGACAGCAAAGGCTTGGACACTGTGGTGGATCTGTTGGCTGATGTGGTTCTGCACCCCCGACTGACAG
Seq C2 exon
ATGAAGAAATTGAGATGACGAGGATGGCTGTGCAGTTTGAACTAGAGGACCTGAACATGAGACCTGACCCAGAGCCACTGCTCACCGAGATGATTCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026926-'6-11,'6-6,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(17.9=100),PF109053=DUF2695=PD(83.3=89.3)
A:
PF0067515=Peptidase_M16=FE(21.2=100)
C2:
PF0067515=Peptidase_M16=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGCTCGATTTGACAGC
R:
AATCATCTCGGTGAGCAGTGG
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: