GgaEX1044774 @ galGal4
Exon Skipping
Gene
ENSGALG00000001950 | PMPCA
Description
mitochondrial-processing peptidase subunit alpha [Source:RefSeq peptide;Acc:NP_001006197]
Coordinates
chr17:7888190-7888886:-
Coord C1 exon
chr17:7888804-7888886
Coord A exon
chr17:7888444-7888538
Coord C2 exon
chr17:7888190-7888290
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCACTGTGCTTGCCTTGCAGGGA
3' ss Score
10.93
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
TCCACAGCGCAGTTTAGCAGCAAAGATGAAATTCTCCTCACCTTAGAAAAACATGGAGGCATCTGCGACTGCCAGGCTTCAAG
Seq A exon
GGACACCATCATGTATGCTGTTTCTGCTGATGCCAAAGGCTTGGACACAGTGGTCAACTTGCTGGCCGACGTAGCCCTGCAGCCCAGGTTATCAG
Seq C2 exon
ATGAAGAAATTGAGATGACTCGAATGGCTATACGGTTTGAGCTCGAGGACTTGAACATGAGACCTGATCCTGAGCCTCTCCTCACAGAGATGATCCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001950_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(17.9=100)
A:
PF0067515=Peptidase_M16=FE(21.2=100)
C2:
PF0067515=Peptidase_M16=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCAGTTTAGCAGCAAAG
R:
CTCTGTGAGGAGAGGCTCAGG
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]