DreEX6015447 @ danRer10
Exon Skipping
Gene
ENSDARG00000101190 | cyp2k8
Description
cytochrome P450, family 2, subfamily K, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-080721-19]
Coordinates
chr3:12637546-12641319:+
Coord C1 exon
chr3:12637546-12637695
Coord A exon
chr3:12637782-12637942
Coord C2 exon
chr3:12641140-12641319
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTATTTGCCTTGCAGGAC
3' ss Score
11.41
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GAATCGTCTTTGCAAATGGTGAAAGATGGAGGACGATGAGAAGATTCGCTCTCTCAACTCTTCGAGACTTTGGAATGGGCAAAAAACTGAGTGAAGAAAAAATCGTGGATGAAACACGTTATCTGCGGGAAGTGTTTATGAAGTTTGAAG
Seq A exon
GACAACCATTTGATACAACCCAACCGGTAAACTATGCCGTCTCCAACATCATCTCAGCTATTGTTTATGGGAAACGGTTTGAATATGAGGACCCAGCGTTTCAGGATATGGTGAACAAAGCAAACATGAACATCCGTATGATTGGTTCTGCTGTGATACAG
Seq C2 exon
ATCTACAACATGTGTCCATTTTTGGGTCCCTGGATTAAGACCTGGAGACAGCTAATGAAAAATATGGAAAGCACCAGGAGGCAAATACAGACCCTGGCAGATGTCTTACAGGAGACTTTGAACCCGCTTGACTGCAGAGGACTCATTGACTCTTTCCTCATCCGAAAACAGAACATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101190-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACGATGAGAAGATTCGC
R:
AAGCGGGTTCAAAGTCTCCTG
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]