RnoEX0025905 @ rn6
Exon Skipping
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83938180-83943291:+
Coord C1 exon
chr1:83938180-83938329
Coord A exon
chr1:83942494-83942654
Coord C2 exon
chr1:83943115-83943291
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTTCACCTCTCCACCTCAGGCA
3' ss Score
7.11
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCATCGCCTTCTCCGATGGAGAACGCTGGAAGATCCTCCGAAGGTTCTCTGTCCAAATCCTGAGGAACTTTGGCATGGGAAAAAGAAGCATCGAGGAGCGGATCCTGGAAGAAGGCAGCTTCCTGCTGGACGTGCTGCGGAAAACGGAAG
Seq A exon
GCAAGCCCTTTGACCCCGTGTTTATCCTGAGCCGCTCGGTCTCCAACATTATTTGCTCTGTCATCTTCGGCAGTCGTTTCGATTATGACGATGAACGGCTGCTCACCATTATCCACTTTATCAATGACAACTTCCAGATTATGAGCAGCCCCTGGGGCGAG
Seq C2 exon
ATGTACAACATCTTCCCGAGTCTCCTGGACTGGGTGCCTGGGCCGCACAGACGCGTGTTCCGGAACTTTGGGGGCATGAAAGATCTCATCGCCCGCAGCGTCCGCGAGCACCAGGACTCCCTGGACCCCAACTCTCCCCGGGACTTCATCGACTGCTTCCTCACAAAAATGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805-'6-6,'6-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGAACTTTGGCATGGG
R:
GAAGCAGTCGATGAAGTCCCG
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]