GgaEX6012097 @ galGal3
Exon Skipping
Gene
ENSGALG00000003917 | F1P2F9_CHICK
Description
NA
Coordinates
chr14:2250719-2252087:+
Coord C1 exon
chr14:2250719-2250868
Coord A exon
chr14:2251249-2251409
Coord C2 exon
chr14:2251914-2252087
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCATTTTGCCTGAACTGCAGGGA
3' ss Score
6.38
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GCATAGCATTCAGCCACGGAGAGTTATGGAAAACTATGAGAAGATTCACCTTGTCCACACTGCGAGATTTTGGAATGGGAAGGAGAACAATTGAGGTCCGAATCCTGGAGGAACTAAATTCTCTAATTAAACATTTTGAATCTTATCAAG
Seq A exon
GGAAACCATTTGACACGAAGATGATCCTCAACAATGCTGTATCCAACGTCATCTGCTCTATACTGTTCGGAGAGAGGTTTGAATATGATGATCCAGCATTTCTCACTTTGCTGAAGCTGTTAAATGAGAATACCAAGCTGCTGGGCTCACCAATGATGCTG
Seq C2 exon
TTATATAATTTCTACCCATCCCTTGGATTTCTCATTGGAGCTTCCAAGACCGTGCTACAAAATATCAGTGAGCTGAGTGCCTTCCTCCAGGAACTCTTCAAGGAGCACGAAGAAGAATTTAATGAGAATAACCTAACAGGCTTCGTTGATGCCTTCATGATGAAGCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003917-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCACGGAGAGTTATGGA
R:
TCGTGCTCCTTGAAGAGTTCC
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]