MmuEX6009197 @ mm10
Exon Skipping
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27124854-27130435:+
Coord C1 exon
chr7:27124854-27125003
Coord A exon
chr7:27129191-27129351
Coord C2 exon
chr7:27130294-27130435
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTTCATCTCTCCACCTCAGGCA
3' ss Score
8.24
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCATCGCCTTCTCCGATGGAGAGCGCTGGAAGATCCTCAGAAGGTTCTCTGTCCAAATCCTGCGGAACTTTGGCATGGGAAAAAGAAGCATCGAGGAGCGGATCCTGGAAGAAGGCAGCTTCCTGCTGGAGGTGCTGAGGAAAATGGAAG
Seq A exon
GCAAGCCCTTTGACCCCGTGTTTATCCTGAGCCGCTCTGTGTCCAACATTATCTGCTCTGTCGTCTTCGGAAGTCGCTTCGACTATGACGATGAGCGTCTGCTCACCATCATCCACTTTATCAATGACAACTTCAAGATTATGAGCAGCCCTTGGGGCGAG
Seq C2 exon
GAGAAGCAAGACCCACTGAGCCACTTCAATATGGATACCCTGCTGATGACCACACACAACCTGCTCTTCGGTGGCACAGAAACCGTGGGCACCACACTGCGTCACGCCTTCCTTATTCTTATGAAATACCCCAAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974-'10-21,'10-12,21-21=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(38.1=100),PF0006717=p450=PU(1.4=1.9)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGGAAGATCCTCAGAAG
R:
AAGAATAAGGAAGGCGTGACG
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types